5AY6 Motor Protein date Aug 10, 2015
title 32 Kda Fragment Of The Flagellar Hook Protein Flge From Caul Crescentus
authors Y.H.Yoon, H.Matsunami, F.A.Samatey
compound source
Molecule: Flagellar Hook Protein Flge
Chain: A, B
Fragment: Unp Residues 165-470
Engineered: Yes
Organism_scientific: Caulobacter Crescentus Cb15
Organism_taxid: 190650
Strain: Cb15
Gene: Flge, Flak, Cc_0902
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.222
length a length b length c angle alpha angle beta angle gamma
55.117 61.580 103.347 90.00 91.92 90.00
method X-Ray Diffractionresolution 1.84 Å
Gene CC
Primary referenceStructural insights into bacterial flagellar hooks similarities and specificities., Yoon YH, Barker CS, Bulieris PV, Matsunami H, Samatey FA, Sci Rep. 2016 Oct 19;6:35552. doi: 10.1038/srep35552. PMID:27759043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (5ay6.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (5ay6.pdb2.gz) 58 Kb
  • CSU: Contacts of Structural Units for 5AY6
  • Structure Factors (499 Kb)
  • Retrieve 5AY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AY6 from S2C, [Save to disk]
  • Re-refined 5ay6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ay6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ay6_B] [5ay6_A] [5ay6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AY6
  • Community annotation for 5AY6 at PDBWiki (http://pdbwiki.org)

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