5B04 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


E, F


H, G


I, J


Primary referenceCrystal structure of eukaryotic translation initiation factor 2B., Kashiwagi K, Takahashi M, Nishimoto M, Hiyama TB, Higo T, Umehara T, Sakamoto K, Ito T, Yokoyama S, Nature. 2016 Mar 3;531(7592):122-5. doi: 10.1038/nature16991. Epub 2016 Feb 22. PMID:26901872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (583 Kb) [Save to disk]
  • Biological Unit Coordinates (5b04.pdb1.gz) 571 Kb
  • LPC: Ligand-Protein Contacts for 5B04
  • CSU: Contacts of Structural Units for 5B04
  • Structure Factors (1192 Kb)
  • Retrieve 5B04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B04 from S2C, [Save to disk]
  • Re-refined 5b04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5B04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b04_J] [5b04] [5b04_A] [5b04_B] [5b04_C] [5b04_D] [5b04_E] [5b04_F] [5b04_G] [5b04_H] [5b04_I]
  • SWISS-PROT database:
  • Domain found in 5B04: [eIF5C ] by SMART

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