5B34 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 4QL, D10, D12, DD9, HP6, OCT, R16, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • Primary referenceMembrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent., Nakane T, Hanashima S, Suzuki M, Saiki H, Hayashi T, Kakinouchi K, Sugiyama S, Kawatake S, Matsuoka S, Matsumori N, Nango E, Kobayashi J, Shimamura T, Kimura K, Mori C, Kunishima N, Sugahara M, Takakyu Y, Inoue S, Masuda T, Hosaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Inoue T, Nureki O, Iwata S, Murata M, Mizohata E, Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13039-13044. Epub 2016 Oct 31. PMID:27799539
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5b34.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5B34
  • CSU: Contacts of Structural Units for 5B34
  • Structure Factors (389 Kb)
  • Retrieve 5B34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B34 from S2C, [Save to disk]
  • Re-refined 5b34 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5B34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b34] [5b34_A]
  • SWISS-PROT database:
  • Domain found in 5B34: [Bac_rhodopsin ] by SMART

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