5B43	Hydrolase Rna Dna	date	Mar 30, 2016
title	Crystal Structure Of Acidaminococcus Sp. Cpf1 In Complex Wit And Target Dna
authors	T.Yamano, H.Nishimasu, H.Hirano, T.Nakane, R.Ishitani, O.Nureki
compound		source
Molecule: Crispr-Associated Endonuclease Cpf1 Chain: A Synonym: Ascpf1 Ec: 3.1.-.- Engineered: Yes		Organism_scientific: Acidaminococcus Sp. Bv3l6 Organism_taxid: 1111120 Strain: Bv3l6 Gene: Cpf1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (43-Mer) Chain: B Synonym: Crrna Engineered: Yes		Synthetic: Yes Organism_scientific: Acidaminococcus Organism_taxid: 904
Molecule: Dna (34-Mer) Chain: C Synonym: Target Dna Engineered: Yes		Synthetic: Yes Organism_scientific: Acidaminococcus Organism_taxid: 904
Molecule: Dna (5'-D(Cpapgptpcpcptptptpa)-3') Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Acidaminococcus Organism_taxid: 904
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.515 136.732 196.909 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	EDO, NA	enzyme	Hydrolase E.C.3.1 BRENDA
Gene Ontology	Chain Function Process Component A nuclease activity endonuclease activity deoxyribonuclease I activity... Bacillus subtilis ribonuclea...
Primary reference	Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA., Yamano T, Nishimasu H, Zetsche B, Hirano H, Slaymaker IM, Li Y, Fedorova I, Nakane T, Makarova KS, Koonin EV, Ishitani R, Zhang F, Nureki O, Cell. 2016 May 5;165(4):949-62. doi: 10.1016/j.cell.2016.04.003. Epub 2016 Apr, 21. PMID:27114038

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (499 Kb) [Save to disk] Biological Unit Coordinates (5b43.pdb1.gz) 491 Kb LPC: Ligand-Protein Contacts for 5B43 CSU: Contacts of Structural Units for 5B43 Structure Factors (649 Kb) Retrieve 5B43 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B43 from S2C, [Save to disk] Re-refined 5b43 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b43_C] [5b43] [5b43_D] [5b43_A] [5b43_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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