5B66 Electron Transport, Photosynthesis date May 25, 2016
title Crystal Structure Analysis Of Photosystem II Complex
authors A.Tanaka, Y.Fukushima, N.Kamiya
compound source
Molecule: Photosystem II Protein D1
Chain: A, a
Synonym: Psii D1 Protein,Photosystem II Q(B) Protein
Ec: 1.10.3.9
 Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Cp47 Reaction Center Protein
Chain: B, b
Synonym: Psii 47 Kda Protein,Protein Cp-47
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Cp43 Reaction Center Protein
Chain: C, c
Synonym: Psii 43 Kda Protein,Protein Cp-43
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II D2 Protein
Chain: D, d
Synonym: Psii D2 Protein,Photosystem Q(A) Protein
Ec: 1.10.3.9
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Cytochrome B559 Subunit Alpha
Chain: E, e
Synonym: Psii Reaction Center Subunit V
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Cytochrome B559 Subunit Beta
Chain: F, f
Synonym: Psii Reaction Center Subunit Vi
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein H
Chain: H, h
Synonym: Psii-H
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein I
Chain: I, I
Synonym: Psii-I,Psii 4.4 Kda Protein
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein J
Chain: J, j
Synonym: Psii-J
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein K
Chain: K, k
Synonym: Psii-K
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein L
Chain: L, l
Synonym: Psii-L
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein M
Chain: M, m
Synonym: Psii-M
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Manganese-Stabilizing Polypeptide
Chain: O, o
Synonym: Msp
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein T
Chain: T, t
Synonym: Psii-Tc
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II 12 Kda Extrinsic Protein
Chain: U, u
Synonym: Ps II Complex 12 Kda Extrinsic Protein,Psii-U
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Cytochrome C-550
Chain: V, v
Synonym: Cytochrome C550,Low-Potential Cytochrome C
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein Ycf12
Chain: Y, y
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein X
Chain: X, x
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053

Molecule: Photosystem II Reaction Center Protein Z
Chain: Z, z
Synonym: Psii-Z
Organism_scientific: Thermosynechococcus Vulcanus
Organism_taxid: 32053
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.465 228.176 286.422 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, FME, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL enzyme Oxidoreductase E.C.1.10.3.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, b


E, e


F, f


H, h


I, i


K, k


L, l


M, m


O, o
  • oxygen evolving activity


    • T, t


    Y, y


    Z, z


    a, A


    c, C


    d, D


    j, J


    u, U


    v, V


    x, X


    Primary referenceTwo Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II., Tanaka A, Fukushima Y, Kamiya N, J Am Chem Soc. 2017 Jan 30. doi: 10.1021/jacs.6b09666. PMID:28102667
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1151 Kb) [Save to disk]
  • Biological Unit Coordinates (5b66.pdb1.gz) 1077 Kb
  • LPC: Ligand-Protein Contacts for 5B66
  • CSU: Contacts of Structural Units for 5B66
  • Structure Factors (14228 Kb)
  • Retrieve 5B66 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B66 from S2C, [Save to disk]
  • Re-refined 5b66 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b66_V] [5b66_K] [5b66_h] [5b66_a] [5b66_U] [5b66_C] [5b66_Z] [5b66_Y] [5b66_m] [5b66_y] [5b66_T] [5b66_l] [5b66_c] [5b66_H] [5b66_o] [5b66_k] [5b66_d] [5b66_L] [5b66_X] [5b66_B] [5b66_v] [5b66_D] [5b66_F] [5b66_x] [5b66_j] [5b66_t] [5b66_E] [5b66] [5b66_e] [5b66_M] [5b66_z] [5b66_b] [5b66_J] [5b66_i] [5b66_I] [5b66_O] [5b66_f] [5b66_u] [5b66_A]
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