5CH0 Dna date Jul 10, 2015
title Crystal Structure Of An A-Form Dna Duplex Containing 5- Hydroxylmethylcytidine
authors J.Sheng
compound source
Molecule: Dna (5'-R(G)-D(P(Ums))-R(Pg)-D(Pt)-R(Pa)-D(P R(Papc)-3');
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 21 2
R_factor 0.190 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.050 43.050 23.764 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand 5HC, UMS enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (5ch0.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 5CH0
  • CSU: Contacts of Structural Units for 5CH0
  • Structure Factors (83 Kb)
  • Retrieve 5CH0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CH0 from S2C, [Save to disk]
  • Re-refined 5ch0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CH0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CH0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ch0_A] [5ch0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CH0
  • Community annotation for 5CH0 at PDBWiki (http://pdbwiki.org)

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