5CQS Protein Binding date Jul 22, 2015
title Dimerization Of Elp1 Is Essential For Elongator Complex Asse
authors Z.Lin, H.Xu, F.Li, W.Diao, J.Long, Y.Shen
compound source
Molecule: Elongator Complex Protein 1
Chain: A, B, C, D
Fragment: Unp Residues 919-1349
Synonym: Gamma-Toxin Target 1,Protein Iki3
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Iki3, Elp1, Tot1, Ylr384c, L3502.7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.234 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.754 157.744 139.264 90.00 93.09 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDimerization of elongator protein 1 is essential for Elongator complex assembly., Xu H, Lin Z, Li F, Diao W, Dong C, Zhou H, Xie X, Wang Z, Shen Y, Long J, Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10697-702. doi:, 10.1073/pnas.1502597112. Epub 2015 Aug 10. PMID:26261306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (429 Kb) [Save to disk]
  • Biological Unit Coordinates (5cqs.pdb1.gz) 213 Kb
  • Biological Unit Coordinates (5cqs.pdb2.gz) 210 Kb
  • LPC: Ligand-Protein Contacts for 5CQS
  • CSU: Contacts of Structural Units for 5CQS
  • Structure Factors (1479 Kb)
  • Retrieve 5CQS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CQS from S2C, [Save to disk]
  • Re-refined 5cqs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CQS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CQS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cqs_D] [5cqs_C] [5cqs_B] [5cqs] [5cqs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CQS
  • Community annotation for 5CQS at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science