5D08	Oxidoreductase	date	Aug 02, 2015
title	Crystal Structure Of Selenomethionine-Labeled Epoxyqueuosine
authors	D.P.Dowling, Z.D.Miles, C.Kohrer, V.Bandarian, C.L.Drennan
compound		source
Molecule: Epoxyqueuosine Reductase Chain: A, B Synonym: Queuosine Biosynthesis Protein Queg Ec: 1.17.99.6 Engineered: Yes		Organism_scientific: Bacillus Subtilis (Strain 168) Organism_taxid: 224308 Strain: 168 Gene: Queg, Ygap, Yhba, Bsu08910 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pask-Iba43plus
symmetry	Space Group: P 21 21 21	R_factor 0.167 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.301 95.780 111.175 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	B12, CL, GOL, MSE, PO4, SF4	enzyme	Oxidoreductase E.C.1.17.99.6 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular basis of cobalamin-dependent RNA modification., Dowling DP, Miles ZD, Kohrer C, Maiocco SJ, Elliott SJ, Bandarian V, Drennan CL, Nucleic Acids Res. 2016 Sep 15. pii: gkw806. PMID:27638883

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (5d08.pdb1.gz) 137 Kb Biological Unit Coordinates (5d08.pdb2.gz) 135 Kb LPC: Ligand-Protein Contacts for 5D08 CSU: Contacts of Structural Units for 5D08 Structure Factors (1137 Kb) Retrieve 5D08 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D08 from S2C, [Save to disk] Re-refined 5d08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5D08

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d08_B] [5d08_A] [5d08] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5D08: [EZ_HEAT ] by SMART

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