5D0J date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, D, C


Primary referenceUnexpected involvement of staple leads to redesign of selective bicyclic peptide inhibitor of Grb7., Gunzburg MJ, Kulkarni K, Watson GM, Ambaye ND, Del Borgo MP, Brandt R, Pero SC, Perlmutter P, Wilce MC, Wilce JA, Sci Rep. 2016 Jun 3;6:27060. doi: 10.1038/srep27060. PMID:27257138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5d0j.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (5d0j.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 5D0J
  • CSU: Contacts of Structural Units for 5D0J
  • Structure Factors (876 Kb)
  • Retrieve 5D0J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D0J from S2C, [Save to disk]
  • Re-refined 5d0j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D0J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d0j] [5d0j_A] [5d0j_B] [5d0j_C] [5d0j_D] [5d0j_L] [5d0j_M]
  • SWISS-PROT database:
  • Domain found in 5D0J: [SH2 ] by SMART

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