5D1O		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	APK, ATP, MG, SO4	enzyme
Gene	MTH
Gene Ontology	Chain Function Process Component B, A
Primary reference	Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis., Gu H, Yoshinari S, Ghosh R, Ignatochkina AV, Gollnick PD, Murakami KS, Ho CK, Nucleic Acids Res. 2016 Feb 20. pii: gkw094. PMID:26896806

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (5d1o.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 5D1O CSU: Contacts of Structural Units for 5D1O Structure Factors (429 Kb) Retrieve 5D1O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D1O from S2C, [Save to disk] Re-refined 5d1o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D1O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d1o] [5d1o_A] [5d1o_B] SWISS-PROT database:

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