5D4Y		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	XYP	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural insight into potential cold adaptation mechanism through a psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase., Zheng Y, Li Y, Liu W, Chen CC, Ko TP, He M, Xu Z, Liu M, Luo H, Guo RT, Yao B, Ma Y, J Struct Biol. 2016 Mar;193(3):206-11. doi: 10.1016/j.jsb.2015.12.010. Epub 2015 , Dec 21. PMID:26719223

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (5d4y.pdb1.gz) 54 Kb Biological Unit Coordinates (5d4y.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 5D4Y CSU: Contacts of Structural Units for 5D4Y Structure Factors (453 Kb) Retrieve 5D4Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D4Y from S2C, [Save to disk] Re-refined 5d4y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D4Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d4y_B] [5d4y] [5d4y_A] SWISS-PROT database: Domain found in 5D4Y: [Glyco_10 ] by SMART

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