5D4Z date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene SPC32H
Gene
Ontology
ChainFunctionProcessComponent
M, L, B, Y, R, 7, U, W, J, X, V, F, I, P, 6, 4, Z, A, 2, N, E, K, 3, O, G, H, Q, 1, C, T, D, 5


Primary referenceNoncanonical DNA-binding mode of repressor and its disassembly by antirepressor., Kim M, Kim HJ, Son SH, Yoon HJ, Lim Y, Lee JW, Seok YJ, Jin KS, Yu YG, Kim SK, Ryu S, Lee HH, Proc Natl Acad Sci U S A. 2016 May 3;113(18):E2480-8. doi:, 10.1073/pnas.1602618113. Epub 2016 Apr 20. PMID:27099293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (524 Kb) [Save to disk]
  • Biological Unit Coordinates (5d4z.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5d4z.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (5d4z.pdb3.gz) 69 Kb
  • Biological Unit Coordinates (5d4z.pdb4.gz) 69 Kb
  • Biological Unit Coordinates (5d4z.pdb5.gz) 70 Kb
  • Biological Unit Coordinates (5d4z.pdb6.gz) 69 Kb
  • Biological Unit Coordinates (5d4z.pdb7.gz) 69 Kb
  • Biological Unit Coordinates (5d4z.pdb8.gz) 69 Kb
  • CSU: Contacts of Structural Units for 5D4Z
  • Structure Factors (1563 Kb)
  • Retrieve 5D4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D4Z from S2C, [Save to disk]
  • Re-refined 5d4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d4z] [5d4z_1] [5d4z_2] [5d4z_3] [5d4z_4] [5d4z_5] [5d4z_6] [5d4z_7] [5d4z_A] [5d4z_B] [5d4z_C] [5d4z_D] [5d4z_E] [5d4z_F] [5d4z_G] [5d4z_H] [5d4z_I] [5d4z_J] [5d4z_K] [5d4z_L] [5d4z_M] [5d4z_N] [5d4z_O] [5d4z_P] [5d4z_Q] [5d4z_R] [5d4z_T] [5d4z_U] [5d4z_V] [5d4z_W] [5d4z_X] [5d4z_Y] [5d4z_Z]
  • SWISS-PROT database:

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