5D6C date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 57S, ACT, CA, GOL enzyme
Primary referenceNovel antibody-antibiotic conjugate eliminates intracellular S. aureus., Lehar SM, Pillow T, Xu M, Staben L, Kajihara KK, Vandlen R, DePalatis L, Raab H, Hazenbos WL, Morisaki JH, Kim J, Park S, Darwish M, Lee BC, Hernandez H, Loyet KM, Lupardus P, Fong R, Yan D, Chalouni C, Luis E, Khalfin Y, Plise E, Cheong J, Lyssikatos JP, Strandh M, Koefoed K, Andersen PS, Flygare JA, Wah Tan M, Brown EJ, Mariathasan S, Nature. 2015 Nov 19;527(7578):323-8. doi: 10.1038/nature16057. Epub 2015 Nov 4. PMID:26536114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (5d6c.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (5d6c.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5D6C
  • CSU: Contacts of Structural Units for 5D6C
  • Structure Factors (1911 Kb)
  • Retrieve 5D6C in mmCIF format [Save to disk]
  • Re-refined 5d6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d6c] [5d6c_A] [5d6c_B] [5d6c_H] [5d6c_L]
  • SWISS-PROT database:
  • Domains found in 5D6C: [IG_like] [IGv ] by SMART

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