5DDD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 59X, DMS, PEG, PG4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRational Design of Orthogonal Multipolar Interactions with Fluorine in Protein-Ligand Complexes., Pollock J, Borkin D, Lund G, Purohit T, Dyguda-Kazimierowicz E, Grembecka J, Cierpicki T, J Med Chem. 2015 Sep 6. PMID:26288158
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5ddd.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 5DDD
  • CSU: Contacts of Structural Units for 5DDD
  • Structure Factors (490 Kb)
  • Retrieve 5DDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DDD from S2C, [Save to disk]
  • Re-refined 5ddd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ddd] [5ddd_A]
  • SWISS-PROT database:

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