5DDU date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, PGE, PMP enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C, A, B


Primary referenceBiochemical and Structural Insights into the Aminotransferase CrmG in Caerulomycin Biosynthesis., Zhu Y, Xu J, Mei X, Feng Z, Zhang L, Zhang Q, Zhang G, Zhu W, Liu J, Zhang C, ACS Chem Biol. 2016 Apr 15;11(4):943-52. doi: 10.1021/acschembio.5b00984. Epub, 2016 Jan 12. PMID:26714051
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (5ddu.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (5ddu.pdb2.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 5DDU
  • CSU: Contacts of Structural Units for 5DDU
  • Structure Factors (4121 Kb)
  • Retrieve 5DDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DDU from S2C, [Save to disk]
  • Re-refined 5ddu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ddu] [5ddu_A] [5ddu_B] [5ddu_C] [5ddu_D]
  • SWISS-PROT database:

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