5DGG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL enzyme
Primary referenceDiverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila., Urbanus ML, Quaile AT, Stogios PJ, Morar M, Rao C, Di Leo R, Evdokimova E, Lam M, Oatway C, Cuff ME, Osipiuk J, Michalska K, Nocek BP, Taipale M, Savchenko A, Ensminger AW, Mol Syst Biol. 2016 Dec 16;12(12):893. doi: 10.15252/msb.20167381. PMID:27986836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (5dgg.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (5dgg.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5DGG
  • CSU: Contacts of Structural Units for 5DGG
  • Structure Factors (759 Kb)
  • Retrieve 5DGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DGG from S2C, [Save to disk]
  • Re-refined 5dgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dgg] [5dgg_A] [5dgg_B]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science