5DGR		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GCS, NA	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Elucidation of exo-beta-D-glucosaminidase activity of a family 9 glycoside hydrolase (PBPRA0520) from Photobacterium profundum SS9., Honda Y, Shimaya N, Ishisaki K, Ebihara M, Taniguchi H, Glycobiology. 2011 Apr;21(4):503-11. doi: 10.1093/glycob/cwq191. Epub 2010 Nov, 22. PMID:21098515

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk] Biological Unit Coordinates (5dgr.pdb1.gz) 193 Kb LPC: Ligand-Protein Contacts for 5DGR CSU: Contacts of Structural Units for 5DGR Structure Factors (1616 Kb) Retrieve 5DGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DGR from S2C, [Save to disk] Re-refined 5dgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dgr] [5dgr_A] [5dgr_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---