OCA Atlas for 5DJQ

5DJQ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, CU, FC6, HEC, HEM, PEO, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, G, K, D	heme binding		cytochrome complex
H, L, E, B	electron transfer activity
I, F, C, M	electron transfer activity

Primary reference

The structure of cbb3 cytochrome oxidase provides insights into proton pumping., Buschmann S, Warkentin E, Xie H, Langer JD, Ermler U, Michel H, Science. 2010 Jul 16;329(5989):327-30. Epub 2010 Jun 24. PMID:20576851

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1358 Kb) [Save to disk]

Biological Unit Coordinates (5djq.pdb1.gz) 339 Kb

Biological Unit Coordinates (5djq.pdb2.gz) 347 Kb

Biological Unit Coordinates (5djq.pdb3.gz) 339 Kb

Biological Unit Coordinates (5djq.pdb4.gz) 344 Kb

LPC: Ligand-Protein Contacts for 5DJQ

CSU: Contacts of Structural Units for 5DJQ

Structure Factors (2168 Kb)

Retrieve 5DJQ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5DJQ from S2C, [Save to disk]

Re-refined 5djq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DJQ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5djq_I] [5djq] [5djq_A] [5djq_B] [5djq_C] [5djq_D] [5djq_E] [5djq_F] [5djq_G] [5djq_H] [5djq_K] [5djq_L] [5djq_M] [5djq_N] [5djq_O] [5djq_P] [5djq_Q]

SWISS-PROT database:

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