5DK5		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	IPA, MES, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Identification of Inhibitors for the DEDDh Family of Exonucleases and a Unique Inhibition Mechanism by Crystal Structure Analysis of CRN-4 Bound with 2-Morpholin-4-ylethanesulfonate (MES)., Huang KW, Hsu KC, Chu LY, Yang JM, Yuan HS, Hsiao YY, J Med Chem. 2016 Sep 8;59(17):8019-29. doi: 10.1021/acs.jmedchem.6b00794. Epub, 2016 Aug 29. PMID:27529560

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk] Biological Unit Coordinates (5dk5.pdb1.gz) 306 Kb LPC: Ligand-Protein Contacts for 5DK5 CSU: Contacts of Structural Units for 5DK5 Structure Factors (693 Kb) Retrieve 5DK5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DK5 from S2C, [Save to disk] Re-refined 5dk5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DK5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dk5] [5dk5_A] [5dk5_B] SWISS-PROT database: Domain found in 5DK5: [EXOIII ] by SMART

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