5DKP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, MAA, MP8, NA, OTT enzyme
Gene
Ontology
ChainFunctionProcessComponent
m, f, K, n, a, A, h, e, k, J, H, i, C, l, E, g, N, L, d, G, b, D, M, c, I, j, B, F


Primary referenceDevelopment and Characterization of Potent Cyclic Acyldepsipeptide Analogues with Increased Antimicrobial Activity., Goodreid JD, Janetzko J, Santa Maria JP Jr, Wong KS, Leung E, Eger BT, Bryson S, Pai EF, Gray-Owen SD, Walker S, Houry WA, Batey RA, J Med Chem. 2016 Jan 28;59(2):624-46. doi: 10.1021/acs.jmedchem.5b01451. Epub, 2016 Jan 12. PMID:26818454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (876 Kb) [Save to disk]
  • Biological Unit Coordinates (5dkp.pdb1.gz) 440 Kb
  • Biological Unit Coordinates (5dkp.pdb2.gz) 433 Kb
  • LPC: Ligand-Protein Contacts for 5DKP
  • CSU: Contacts of Structural Units for 5DKP
  • Structure Factors (2232 Kb)
  • Retrieve 5DKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DKP from S2C, [Save to disk]
  • Re-refined 5dkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dkp] [5dkp_0] [5dkp_1] [5dkp_2] [5dkp_3] [5dkp_A] [5dkp_B] [5dkp_C] [5dkp_D] [5dkp_E] [5dkp_F] [5dkp_G] [5dkp_H] [5dkp_I] [5dkp_J] [5dkp_K] [5dkp_L] [5dkp_M] [5dkp_N] [5dkp_O] [5dkp_P] [5dkp_Q] [5dkp_R] [5dkp_S] [5dkp_T] [5dkp_U] [5dkp_V] [5dkp_W] [5dkp_X] [5dkp_Y] [5dkp_Z] [5dkp_a] [5dkp_b] [5dkp_c] [5dkp_d] [5dkp_e] [5dkp_f] [5dkp_g] [5dkp_h] [5dkp_i] [5dkp_j] [5dkp_k] [5dkp_l] [5dkp_m] [5dkp_n] [5dkp_o] [5dkp_p] [5dkp_q] [5dkp_r] [5dkp_s] [5dkp_t] [5dkp_u] [5dkp_v] [5dkp_w] [5dkp_x] [5dkp_y] [5dkp_z]
  • SWISS-PROT database:

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