5DU2 Transferase date Sep 18, 2015
title Structural Analysis Of Espg2 Glycosyltransferase
authors K.Michalska, S.I.Elshahawi, L.Bigelow, G.Babnigg, J.S.Thorson, G.N.Phillips Jr., A.Joachimiak, Midwest Center For Structural (Mcsg), Enzyme Discovery For Natural Product Biosynthesis (N
compound source
Molecule: Espg2 Glycosyltransferase
Chain: A, B
Engineered: Yes
 Organism_scientific: Actinomadura Verrucosospora
Organism_taxid: 46165
Atcc: 39334
Gene: Espg2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 21 21 21
R_factor 0.200 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.331 178.381 189.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (5du2.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (5du2.pdb2.gz) 119 Kb
  • CSU: Contacts of Structural Units for 5DU2
  • Structure Factors (1177 Kb)
  • Retrieve 5DU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DU2 from S2C, [Save to disk]
  • Re-refined 5du2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DU2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5du2_A] [5du2] [5du2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DU2
  • Community annotation for 5DU2 at PDBWiki (http://pdbwiki.org)

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