5DZR Hydrolase date Sep 26, 2015
title Structure Of Rna Helicase Frh A Critical Component Of The Ne Crassa Circadian Clock
authors K.S.Conrad, B.C.Crane
compound source
Molecule: Frq-Interacting Rna Helicase
Chain: A
Fragment: Residues 114-1106
Engineered: Yes
 Organism_scientific: Neurospora Crassa
Organism_taxid: 367110
Strain: Atcc 24698 74-Or23-1a Cbs 708.71 Dsm 1257 F
Gene: Frh, Ncu03363
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.264 R_Free 0.325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.797 107.749 125.769 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.16 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock., Conrad KS, Hurley JM, Widom J, Ringelberg CS, Loros JJ, Dunlap JC, Crane BR, EMBO J. 2016 Jun 23. pii: e201694327. PMID:27340124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5dzr.pdb1.gz) 156 Kb
  • CSU: Contacts of Structural Units for 5DZR
  • Structure Factors (320 Kb)
  • Retrieve 5DZR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DZR from S2C, [Save to disk]
  • Re-refined 5dzr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DZR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DZR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dzr_A] [5dzr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5DZR: [DEXDc] [DSHCT] [HELICc ] by SMART
    • Other resources with information on 5DZR
  • Community annotation for 5DZR at PDBWiki (http://pdbwiki.org)

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