5E4F Hydrolase date Oct 05, 2015
title The Spring Alpha-Helix Coordinates Multiple Modes Of Hcv Ns3 Action
authors M.Gu, C.M.Rice
compound source
Molecule: Serine Protease Ns3
Chain: A, B
Fragment: Unp Residues 1215-1651
Ec: 3.4.21.98, 3.6.1.15, 3.6.4.13
Engineered: Yes
Organism_scientific: Hepatitis C Virus Genotype 1b (Isolate
Organism_common: Hcv
Organism_taxid: 333284
Strain: Isolate Con1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.451 46.104 109.041 90.00 104.05 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ADP, ALF, MG enzyme Hydrolase E.C.3.4.21.98 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Spring alpha-Helix Coordinates Multiple Modes of HCV NS3 Helicase Action., Gu M, Rice CM, J Biol Chem. 2016 May 12. pii: jbc.M115.704379. PMID:27226535
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5e4f.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (5e4f.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 5E4F
  • CSU: Contacts of Structural Units for 5E4F
  • Structure Factors (1113 Kb)
  • Retrieve 5E4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E4F from S2C, [Save to disk]
  • Re-refined 5e4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E4F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e4f_A] [5e4f_B] [5e4f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5E4F: [DEXDc] [HELICc3 ] by SMART
  • Other resources with information on 5E4F
  • Community annotation for 5E4F at PDBWiki (http://pdbwiki.org)

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