5EFR Cell Adhesion date Oct 24, 2015
title Crystal Structure Of A Bama-Bamd Fusion
authors H.T.Bergal, A.H.Hopkins, S.I.Metzner, M.C.Sousa
compound source
Molecule: Bama-Bamd Fusion Protein
Chain: A
Synonym: Outer Membrane Protein Assembly Complex, Yaet Prot Membrane Assembly Lipoprotein Yfio;
Engineered: Yes
Other_details: Sequence Mismatches To Alanine Are Not Mutat Are Unmodeled Side Chains.
 Organism_scientific: Rhodothermus Marinus
Organism_taxid: 29549
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.909 48.062 78.027 90.00 104.31 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of a BamA-BamD Fusion Illuminates the Architecture of the beta-Barrel Assembly Machine Core., Bergal HT, Hopkins AH, Metzner SI, Sousa MC, Structure. 2015 Dec 29. pii: S0969-2126(15)00508-0. doi:, 10.1016/j.str.2015.10.030. PMID:26749448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5efr.pdb1.gz) 131 Kb
  • CSU: Contacts of Structural Units for 5EFR
  • Structure Factors (590 Kb)
  • Retrieve 5EFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EFR from S2C, [Save to disk]
  • Re-refined 5efr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EFR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5efr_A] [5efr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EFR: [TPR ] by SMART
    • Other resources with information on 5EFR
  • Community annotation for 5EFR at PDBWiki (http://pdbwiki.org)

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