5EPD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form., Zahradnik J, Kolenko P, Palyzova A, Cerny J, Kolarova L, Kyslikova E, Maresova H, Grulich M, Nunvar J, Sulc M, Kyslik P, Schneider B, PLoS One. 2018 Apr 9;13(4):e0195299. doi: 10.1371/journal.pone.0195299., eCollection 2018. PMID:29630677

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (5epd.pdb1.gz) 57 Kb CSU: Contacts of Structural Units for 5EPD Structure Factors (1253 Kb) Retrieve 5EPD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EPD from S2C, [Save to disk] Re-refined 5epd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EPD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5epd] [5epd_A] SWISS-PROT database:

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