5EPP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructural insights into the interaction of p97 N-terminus domain and VBM in rhomboid protease, RHBDL4., Lim JJ, Lee Y, Ly TT, Kang JY, Lee JG, An JY, Youn HS, Park KR, Kim TG, Yang JK, Jun Y, Eom SH, Biochem J. 2016 Sep 15;473(18):2863-80. doi: 10.1042/BCJ20160237. Epub 2016 Jul, 12. PMID:27407164
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (5epp.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 5EPP
  • Structure Factors (368 Kb)
  • Retrieve 5EPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EPP from S2C, [Save to disk]
  • Re-refined 5epp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5epp] [5epp_A] [5epp_B]
  • SWISS-PROT database:
  • Domains found in 5EPP: [CDC48_2] [CDC48_N ] by SMART

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