5F28 Transcription, Protein Binding date Dec 01, 2015
title Crystal Structure Of Fat Domain Of Focal Adhesion Kinase (Fa To The Transcription Factor Mef2c
authors A.C.Cardoso, A.L.B.Ambrosio, A.Dessen, K.G.Franchini
compound source
Molecule: Mef2c
Chain: A, B, C, D
Fragment: Unp Residues 1-95
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: C41 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petsumo

Molecule: Focal Adhesion Kinase 1
Chain: E, F, G
Fragment: Unp Residues 935-1083
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: C41 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Tev
symmetry Space Group: P 42 21 2
R_factor 0.208 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.210 139.210 90.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


F, G, E


Primary referenceFAK Forms a Complex with MEF2 to Couple Biomechanical Signaling to Transcription in Cardiomyocytes., Cardoso AC, Pereira AHM, Ambrosio ALB, Consonni SR, Rocha de Oliveira R, Bajgelman MC, Dias SMG, Franchini KG, Structure. 2016 Aug 2;24(8):1301-1310. doi: 10.1016/j.str.2016.06.003. Epub 2016 , Jul 14. PMID:27427476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (5f28.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5f28.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (5f28.pdb3.gz) 219 Kb
  • CSU: Contacts of Structural Units for 5F28
  • Structure Factors (1261 Kb)
  • Retrieve 5F28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F28 from S2C, [Save to disk]
  • Re-refined 5f28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F28 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F28
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5f28 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f28] [5f28_B] [5f28_F] [5f28_G] [5f28_C] [5f28_E] [5f28_D] [5f28_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5F28: [MADS ] by SMART
  • Other resources with information on 5F28
  • Community annotation for 5F28 at PDBWiki (http://pdbwiki.org)

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