5F28	Transcription, Protein Binding	date	Dec 01, 2015
title	Crystal Structure Of Fat Domain Of Focal Adhesion Kinase (Fa To The Transcription Factor Mef2c
authors	A.C.Cardoso, A.L.B.Ambrosio, A.Dessen, K.G.Franchini
compound		source
Molecule: Mef2c Chain: A, B, C, D Fragment: Unp Residues 1-95 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: C41 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petsumo
Molecule: Focal Adhesion Kinase 1 Chain: E, F, G Fragment: Unp Residues 935-1083 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: C41 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Tev
symmetry	Space Group: P 42 21 2	R_factor 0.208 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 139.210 139.210 90.350 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A, D, C, B F, G, E
Primary reference	FAK Forms a Complex with MEF2 to Couple Biomechanical Signaling to Transcription in Cardiomyocytes., Cardoso AC, Pereira AHM, Ambrosio ALB, Consonni SR, Rocha de Oliveira R, Bajgelman MC, Dias SMG, Franchini KG, Structure. 2016 Aug 2;24(8):1301-1310. doi: 10.1016/j.str.2016.06.003. Epub 2016 , Jul 14. PMID:27427476

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (5f28.pdb1.gz) 45 Kb Biological Unit Coordinates (5f28.pdb2.gz) 45 Kb Biological Unit Coordinates (5f28.pdb3.gz) 215 Kb CSU: Contacts of Structural Units for 5F28 Structure Factors (1261 Kb) Retrieve 5F28 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F28 from S2C, [Save to disk] Re-refined 5f28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5F28

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f28] [5f28_B] [5f28_F] [5f28_G] [5f28_C] [5f28_E] [5f28_D] [5f28_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5F28: [MADS ] by SMART

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