5FDF	Hydrolase	date	Dec 16, 2015
title	Crystal Structure Of The Monoclinic Form Of Thermotoga Marit Esterase Tm0077 (Apo Structure) At 1.76 Angstrom Resolution
authors	N.Manoj, M.K.Singh
compound		source
Molecule: Cephalosporin-C Deacetylase Chain: A, B, C, D, E, F Synonym: Acetylxylan Esterase, Acetyl Esterase Ec: 3.1.1.41,3.1.1.72 Engineered: Yes		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Gene: Axea, Tm_0077 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmh1
symmetry	Space Group: P 1 21 1	R_factor 0.160 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.760 116.200 103.290 90.00 109.97 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand	ACT, CL	enzyme	Hydrolase E.C.3.1.1.41 BRENDA
Gene	TM
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	An extended loop in CE7 carbohydrate esterase family is dispensable for oligomerization but required for activity and thermostability., Singh MK, Manoj N, J Struct Biol. 2016 Jun;194(3):434-45. doi: 10.1016/j.jsb.2016.04.008. Epub 2016 , Apr 13. PMID:27085421

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk] Biological Unit Coordinates (5fdf.pdb1.gz) 325 Kb LPC: Ligand-Protein Contacts for 5FDF CSU: Contacts of Structural Units for 5FDF Structure Factors (4127 Kb) Retrieve 5FDF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FDF from S2C, [Save to disk] Re-refined 5fdf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FDF in 3D

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Visual 3D analysis of 5FDF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fdf_D] [5fdf_F] [5fdf] [5fdf_E] [5fdf_C] [5fdf_A] [5fdf_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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