5FM8 Structural Protein date Nov 02, 2015
title Structure Of The C-Terminally Extended Domain My4 Of Human M (Space Group P65)
authors S.Pernigo, R.A.Steiner
compound source
Molecule: Myomesin-1
Chain: A, B, C, D
Fragment: My4 Extended At Its C-Terminus, Unp Residues 510-
Synonym: 190 Kda Connectin-Associated Protein, 190 Kda Titi Associated Protein, Myomesin Family Member 1, Myomesin;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.192 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.410 97.410 106.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand NI, TRS enzyme
Primary referenceBinding of Myomesin to Obscurin-Like-1 at the Muscle M-Band Provides a Strategy for Isoform-Specific Mechanical Protection., Pernigo S, Fukuzawa A, Beedle AE, Holt M, Round A, Pandini A, Garcia-Manyes S, Gautel M, Steiner RA, Structure. 2016 Dec 15. pii: S0969-2126(16)30357-4. doi:, 10.1016/j.str.2016.11.015. PMID:27989621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (5fm8.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (5fm8.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (5fm8.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (5fm8.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 5FM8
  • CSU: Contacts of Structural Units for 5FM8
  • Structure Factors (381 Kb)
  • Retrieve 5FM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FM8 from S2C, [Save to disk]
  • Re-refined 5fm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FM8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fm8] [5fm8_B] [5fm8_A] [5fm8_D] [5fm8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FM8: [FN3 ] by SMART
    • Other resources with information on 5FM8
  • Community annotation for 5FM8 at PDBWiki (http://pdbwiki.org)

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