5FPV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MMK, MN, NI, ZN enzyme
Primary referenceStructural analysis of human KDM5B guides histone demethylase inhibitor development., Johansson C, Velupillai S, Tumber A, Szykowska A, Hookway ES, Nowak RP, Strain-Damerell C, Gileadi C, Philpott M, Burgess-Brown N, Wu N, Kopec J, Nuzzi A, Steuber H, Egner U, Badock V, Munro S, LaThangue NB, Westaway S, Brown J, Athanasou N, Prinjha R, Brennan PE, Oppermann U, Nat Chem Biol. 2016 May 23. doi: 10.1038/nchembio.2087. PMID:27214403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (912 Kb) [Save to disk]
  • Biological Unit Coordinates (5fpv.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (5fpv.pdb2.gz) 121 Kb
  • Biological Unit Coordinates (5fpv.pdb3.gz) 119 Kb
  • Biological Unit Coordinates (5fpv.pdb4.gz) 119 Kb
  • Biological Unit Coordinates (5fpv.pdb5.gz) 117 Kb
  • Biological Unit Coordinates (5fpv.pdb6.gz) 121 Kb
  • Biological Unit Coordinates (5fpv.pdb7.gz) 120 Kb
  • Biological Unit Coordinates (5fpv.pdb8.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 5FPV
  • CSU: Contacts of Structural Units for 5FPV
  • Structure Factors (2223 Kb)
  • Retrieve 5FPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FPV from S2C, [Save to disk]
  • Re-refined 5fpv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fpv] [5fpv_A] [5fpv_B] [5fpv_C] [5fpv_D] [5fpv_E] [5fpv_F] [5fpv_G] [5fpv_H]
  • SWISS-PROT database:
  • Domains found in 5FPV: [JmjC] [JmjN ] by SMART

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