5FXI	Transport Protein	date	Mar 02, 2016
title	Glun1b-Glun2b Nmda Receptor Structure In Non-Active-2 Confor
authors	N.Tajima, E.Karakas, T.Grant, N.Simorowski, R.Diaz-Avalos, N.Grig H.Furukawa
compound		source
Molecule: N-Methyl-D-Aspartate Receptor Glun1 Chain: A, C Fragment: Unp Residues 23-868 Synonym: Glun1, Glutamate Nmda Receptor Subunit Zeta-1, N-M Aspartate Receptor Subunit Nr1, Nmd-R1, N-Methyl-D-Aspartat Glun1; Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Modified Pfl And Pucdm
Molecule: N-Methyl-D-Aspartate Receptor Glun2b Chain: B, D Fragment: Unp Residues 27-852 Synonym: Glun1, Glutamate Nmda Receptor Subunit Zeta-1, N-M Spartate Receptor Subunit Nr1, Nmd-R1, N-Methyl-D-Aspartate Glun1; Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Modified Pfl And Pucdm
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	6.40 Å
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Activation of NMDA receptors and the mechanism of inhibition by ifenprodil., Tajima N, Karakas E, Grant T, Simorowski N, Diaz-Avalos R, Grigorieff N, Furukawa H, Nature. 2016 May 2. doi: 10.1038/nature17679. PMID:27135925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk] Biological Unit Coordinates (5fxi.pdb1.gz) 264 Kb CSU: Contacts of Structural Units for 5FXI Retrieve 5FXI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FXI from S2C, [Save to disk]

View 5FXI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FXI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fxi] [5fxi_B] [5fxi_C] [5fxi_D] [5fxi_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5FXI: [Lig_chan-Glu_bd] [PBPe ] by SMART

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