OCA Atlas for 5FYJ

5FYJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, CIT, EDO, MAN, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
G

Primary reference

Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G., Stewart-Jones GB, Soto C, Lemmin T, Chuang GY, Druz A, Kong R, Thomas PV, Wagh K, Zhou T, Behrens AJ, Bylund T, Choi CW, Davison JR, Georgiev IS, Joyce MG, Kwon YD, Pancera M, Taft J, Yang Y, Zhang B, Shivatare SS, Shivatare VS, Lee CC, Wu CY, Bewley CA, Burton DR, Koff WC, Connors M, Crispin M, Baxa U, Korber BT, Wong CH, Mascola JR, Kwong PD, Cell. 2016 May 5;165(4):813-26. doi: 10.1016/j.cell.2016.04.010. Epub 2016 Apr, 21. PMID:27114034

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (647 Kb) [Save to disk]

Biological Unit Coordinates (5fyj.pdb1.gz) 1840 Kb

LPC: Ligand-Protein Contacts for 5FYJ

CSU: Contacts of Structural Units for 5FYJ

Structure Factors (1089 Kb)

Retrieve 5FYJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5FYJ from S2C, [Save to disk]

Re-refined 5fyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FYJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fyj_U] [5fyj_V] [5fyj] [5fyj_B] [5fyj_D] [5fyj_E] [5fyj_G] [5fyj_H] [5fyj_L]

SWISS-PROT database:

Domains found in 5FYJ: [IG_like] [IGv ] by SMART

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