5G1D	Signaling Protein	date	Mar 25, 2016
title	The Complex Structure Of Syntenin-1 Pdz Domain With C-Termin Extension
authors	I.Lee, H.Kim, J.H.Yun, W.Lee
compound		source
Molecule: Syntenin-1 Chain: A, B Synonym: Syndecan-Binding Protein 1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet21b
Molecule: Syndecan-4 Chain: C, D Fragment: 195-202 Engineered: Yes		Synthetic: Yes Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.525 88.529 90.368 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.81 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	New structural insight of C-terminal region of Syntenin-1, enhancing the molecular dimerization and inhibitory function related on Syndecan-4 signaling., Choi Y, Yun JH, Yoo J, Lee I, Kim H, Son HN, Kim IS, Yoon HS, Zimmermann P, Couchman JR, Cho HS, Oh ES, Lee W, Sci Rep. 2016 Nov 10;6:36818. doi: 10.1038/srep36818. PMID:27830760

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (5g1d.pdb1.gz) 109 Kb CSU: Contacts of Structural Units for 5G1D Structure Factors (163 Kb) Retrieve 5G1D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5G1D from S2C, [Save to disk] Re-refined 5g1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5G1D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5G1D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g1d] [5g1d_C] [5g1d_A] [5g1d_D] [5g1d_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5G1D: [PDZ ] by SMART

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