5GMS Hydrolase date Jul 15, 2016
title Crystal Structure Of The Mutant S202wi203f Of The Esterase
authors Y.Z.Zhang, P.Y.Li
compound source
Molecule: Esterase
Chain: A, B
Synonym: Esterase E40
Engineered: Yes
Mutation: Yes
 Organism_scientific: Uncultured Bacterium
Organism_taxid: 77133
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.162 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.108 144.845 96.067 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Mechanistic Insights into the Improvement of the Halotolerance of a Marine Microbial Esterase by Increasing Intra- and Interdomain Hydrophobic Interactions., Li PY, Zhang Y, Xie BB, Zhang YQ, Hao J, Wang Y, Wang P, Li CY, Qin QL, Zhang XY, Su HN, Shi M, Zhang YZ, Chen XL, Appl Environ Microbiol. 2017 Aug 31;83(18). pii: AEM.01286-17. doi:, 10.1128/AEM.01286-17. Print 2017 Sep 15. PMID:28733281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (5gms.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (5gms.pdb2.gz) 103 Kb
  • CSU: Contacts of Structural Units for 5GMS
  • Structure Factors (1948 Kb)
  • Retrieve 5GMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GMS from S2C, [Save to disk]
  • Re-refined 5gms structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GMS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gms_A] [5gms_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GMS
  • Community annotation for 5GMS at PDBWiki (http://pdbwiki.org)

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