5GQ1 Hydrolase date Aug 05, 2016
title Crystal Structure Of 2c Helicase From Enterovirus 71 (Ev71)
authors H.X.Guan, J.Tian, B.Qin, J.Wojdyla, M.T.Wang, S.Cui
compound source
Molecule: Genome Polyprotein
Chain: A, B, C, D, E, F
Engineered: Yes
Mutation: Yes
 Organism_scientific: Enterovirus A71
Organism_taxid: 39054
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.109 159.654 75.606 90.00 90.16 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand PO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk]
  • Biological Unit Coordinates (5gq1.pdb1.gz) 344 Kb
  • LPC: Ligand-Protein Contacts for 5GQ1
  • CSU: Contacts of Structural Units for 5GQ1
  • Structure Factors (2577 Kb)
  • Retrieve 5GQ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GQ1 from S2C, [Save to disk]
  • Re-refined 5gq1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GQ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GQ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gq1_A] [5gq1] [5gq1_D] [5gq1_B] [5gq1_E] [5gq1_C] [5gq1_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GQ1
  • Community annotation for 5GQ1 at PDBWiki (http://pdbwiki.org)

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