5GW8 Hydrolase date Sep 09, 2016
title Crystal Structure Of A Putative Dag-Like Lipase (Mgmdl2) Fro Malassezia Globosa
authors J.Xu, H.Xu, J.Liu
compound source
Molecule: Hypothetical Secretory Lipase (Family 3)
Chain: A, B
Engineered: Yes
 Organism_scientific: Malassezia Globosa (Strain Atcc Mya-46 7966);
Organism_common: Dandruff-Associated Fungus
Organism_taxid: 425265
Strain: Atcc Mya-4612 Cbs 7966
Gene: Mgl_0799
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.970 82.320 116.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACY, FMT, GOL, MLA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMalassezia globosa MgMDL2 lipase: Crystal structure and rational modification of substrate specificity., Lan D, Xu H, Xu J, Dubin G, Liu J, Iqbal Khan F, Wang Y, Biochem Biophys Res Commun. 2017 Jun 24;488(2):259-265. doi:, 10.1016/j.bbrc.2017.04.103. Epub 2017 Apr 20. PMID:28433636
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (5gw8.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 5GW8
  • CSU: Contacts of Structural Units for 5GW8
  • Structure Factors (2284 Kb)
  • Retrieve 5GW8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GW8 from S2C, [Save to disk]
    • View 5GW8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GW8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gw8_B] [5gw8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GW8
  • Community annotation for 5GW8 at PDBWiki (http://pdbwiki.org)

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