5H11 Exocytosis date Oct 07, 2016
title Crystal Structure Of Zebrafish Sec10
authors J.Chen, A.Yamagata, S.Fukai
compound source
Molecule: Uncharacterized Protein
Chain: A
Fragment: Unp Residues 195-708
Synonym: Sec10, Exocyst Complex
Engineered: Yes
Mutation: Yes
 Organism_scientific: Danio Rerio
Organism_common: Zebrafish
Organism_taxid: 7955
Gene: Exoc5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.693 162.652 45.572 90.00 95.55 90.00
method X-Ray Diffractionresolution 2.73 Å
ligand BR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Sec10, a subunit of the exocyst complex., Chen J, Yamagata A, Kubota K, Sato Y, Goto-Ito S, Fukai S, Sci Rep. 2017 Jan 18;7:40909. doi: 10.1038/srep40909. PMID:28098232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (5h11.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 5H11
  • CSU: Contacts of Structural Units for 5H11
  • Structure Factors (408 Kb)
  • Retrieve 5H11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H11 from S2C, [Save to disk]
  • Re-refined 5h11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H11
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h11_A] [5h11]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H11
  • Community annotation for 5H11 at PDBWiki (http://pdbwiki.org)

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