5H65 Dna Binding Protein date Nov 10, 2016
title Crystal Structure Of Human Pot1 And Tpp1
authors C.Chen, J.Wu, M.Lei
compound source
Molecule: Protection Of Telomeres Protein 1
Chain: A
Fragment: Ob Fold And Holiday Junction Like Domain (Unp Res 634);
Synonym: Hpot1,Pot1-Like Telomere End-Binding Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pot1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Adrenocortical Dysplasia Protein Homolog
Chain: B
Fragment: Pot1 Binding Motif (Unp Residues 266-316)
Synonym: Pot1 And Tin2-Interacting Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acd, Pip1, Ptop, Tint1, Tpp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal-C2x
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.231 87.824 87.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5h65.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5H65
  • CSU: Contacts of Structural Units for 5H65
  • Structure Factors (291 Kb)
  • Retrieve 5H65 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H65 from S2C, [Save to disk]
  • Re-refined 5h65 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5H65 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H65
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h65_B] [5h65_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H65
  • Community annotation for 5H65 at PDBWiki (http://pdbwiki.org)

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