5HGQ Ligase Ligase Inhibitor date Jan 08, 2016
title Loa Loa Lysyl-Trna Synthetase In Complex With Cladosporin.
authors A.Sharma, M.Sharma, M.Yogavel, A.Sharma
compound source
Molecule: Lysine--Trna Ligase
Chain: A, D, B, C
Fragment: Unp Residues 78-599
Synonym: Lysyl-Trna Synthetase
Ec: 6.1.1.6
Engineered: Yes
 Organism_scientific: Loa Loa
Organism_common: Eye Worm
Organism_taxid: 7209
Gene: Loag_03217
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_plasmid: Petm41
symmetry Space Group: P 21 21 21
R_factor 0.254 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.165 147.355 160.944 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.28 Å
ligand GOL, KRS, LYS enzyme Ligase E.C.6.1.1.6 BRENDA
Gene LOAG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceProtein Translation Enzyme lysyl-tRNA Synthetase Presents a New Target for Drug Development against Causative Agents of Loiasis and Schistosomiasis., Sharma A, Sharma M, Yogavel M, Sharma A, PLoS Negl Trop Dis. 2016 Nov 2;10(11):e0005084. doi:, 10.1371/journal.pntd.0005084. eCollection 2016 Nov. PMID:27806050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (613 Kb) [Save to disk]
  • Biological Unit Coordinates (5hgq.pdb1.gz) 303 Kb
  • Biological Unit Coordinates (5hgq.pdb2.gz) 303 Kb
  • LPC: Ligand-Protein Contacts for 5HGQ
  • CSU: Contacts of Structural Units for 5HGQ
  • Structure Factors (284 Kb)
  • Retrieve 5HGQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HGQ from S2C, [Save to disk]
  • Re-refined 5hgq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HGQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HGQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hgq_D] [5hgq] [5hgq_A] [5hgq_B] [5hgq_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HGQ
  • Community annotation for 5HGQ at PDBWiki (http://pdbwiki.org)

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