5HMP	Motor Protein	date	Jan 16, 2016
title	Myosin Vc Pre-Powerstroke State
authors	V.Ropars, O.Pylypenko, H.L.Sweeney, A.Houdusse
compound		source
Molecule: Unconventional Myosin-Vc Chain: A, B Fragment: Unp Resideus 5-754 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Myo5c Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 10469 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.780 66.740 131.260 90.00 104.45 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ADP, DMS, EDO, MG, VO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The myosin X motor is optimized for movement on actin bundles., Ropars V, Yang Z, Isabet T, Blanc F, Zhou K, Lin T, Liu X, Hissier P, Samazan F, Amigues B, Yang ED, Park H, Pylypenko O, Cecchini M, Sindelar CV, Sweeney HL, Houdusse A, Nat Commun. 2016 Sep 1;7:12456. doi: 10.1038/ncomms12456. PMID:27580874

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (681 Kb) [Save to disk] Biological Unit Coordinates (5hmp.pdb1.gz) 331 Kb Biological Unit Coordinates (5hmp.pdb2.gz) 346 Kb LPC: Ligand-Protein Contacts for 5HMP CSU: Contacts of Structural Units for 5HMP Structure Factors (602 Kb) Retrieve 5HMP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HMP from S2C, [Save to disk] Re-refined 5hmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HMP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HMP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hmp_A] [5hmp_B] [5hmp] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5HMP: [MYSc ] by SMART

Other resources with information on 5HMP

Community annotation for 5HMP at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---