5HNR	Lyase	date	Jan 18, 2016
title	The X-Ray Structure Of Octameric Human Native 5-Aminolaevuli Dehydratase.
authors	N.L.Mills-Davies, D.Thompson, P.M.Shoolingin-Jordan, P.T.Erskin J.B.Cooper
compound		source
Molecule: Delta-Aminolevulinic Acid Dehydratase Chain: A, B Synonym: Aladh,Porphobilinogen Synthase Ec: 4.2.1.24		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood
symmetry	Space Group: I 4 2 2	R_factor 0.165 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.530 125.530 200.910 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.83 Å
ligand	DAV, SO4, ZN	enzyme	Lyase E.C.4.2.1.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural studies of substrate and product complexes of 5-aminolaevulinic acid dehydratase from humans, Escherichia coli and the hyperthermophile Pyrobaculum calidifontis., Mills-Davies N, Butler D, Norton E, Thompson D, Sarwar M, Guo J, Gill R, Azim N, Coker A, Wood SP, Erskine PT, Coates L, Cooper JB, Rashid N, Akhtar M, Shoolingin-Jordan PM, Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):9-21. doi:, 10.1107/S2059798316019525. Epub 2017 Jan 1. PMID:28045381

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (5hnr.pdb1.gz) 391 Kb LPC: Ligand-Protein Contacts for 5HNR CSU: Contacts of Structural Units for 5HNR Structure Factors (389 Kb) Retrieve 5HNR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HNR from S2C, [Save to disk] Re-refined 5hnr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HNR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HNR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hnr] [5hnr_A] [5hnr_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5HNR: [ALAD ] by SMART

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