5HSF Immune System date Jan 25, 2016
title 1.52 Angstrom Crystal Structure Of Fc Fragment Of Human Igg1
authors G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, K.Flor B.Bishop, K.Kwon, W.F.Anderson, Center For Structural Genomics Infectious Diseases (Csgid)
compound source
Molecule: Ig Gamma-1 Chain C Region
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ighg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Pmagic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg28
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.713 43.880 49.579 90.00 92.64 90.00
method X-Ray Diffractionresolution 1.52 Å
ligand PGE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5hsf.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 5HSF
  • CSU: Contacts of Structural Units for 5HSF
  • Structure Factors (677 Kb)
  • Retrieve 5HSF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HSF from S2C, [Save to disk]
  • Re-refined 5hsf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HSF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HSF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hsf] [5hsf_B] [5hsf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HSF: [IGc1 ] by SMART
    • Other resources with information on 5HSF
  • Community annotation for 5HSF at PDBWiki (http://pdbwiki.org)

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