5HVL	Transferase	date	Jan 28, 2016
title	Structure Of Candida Albicans Trehalose-6-Phosphate Synthase Complex With Udp And Validoxylamine A
authors	Y.Miao, R.G.Brennan
compound		source
Molecule: Alpha,Alpha-Trehalose-Phosphate Synthase [Udp-For Chain: A, B Synonym: Trehalose-6-Phosphate Synthase,Udp-Glucose-Glucose Glucosyltransferase; Ec: 2.4.1.15 Engineered: Yes		Organism_scientific: Candida Albicans (Strain Sc5314 Atcc 2876); Organism_common: Yeast Organism_taxid: 237561 Strain: Sc5314 Atcc Mya-2876 Gene: Tps1, Cao19.13961, Cao19.6640 Expression_system: Escherichia Coli Expression_system_taxid: 866768 Expression_system_strain: Bl21-Gold(De3)Plyss Ag
symmetry	Space Group: P 65 2 2	R_factor 0.179 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.563 115.563 282.690 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	SO4, UDP, VDM	enzyme	Transferase E.C.2.4.1.15 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and In Vivo Studies on Trehalose-6-Phosphate Synthase from Pathogenic Fungi Provide Insights into Its Catalytic Mechanism, Biological Necessity, and Potential for Novel Antifungal Drug Design., Miao Y, Tenor JL, Toffaletti DL, Maskarinec SA, Liu J, Lee RE, Perfect JR, Brennan RG, MBio. 2017 Jul 25;8(4). pii: e00643-17. doi: 10.1128/mBio.00643-17. PMID:28743811

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (5hvl.pdb1.gz) 170 Kb Biological Unit Coordinates (5hvl.pdb2.gz) 170 Kb Biological Unit Coordinates (5hvl.pdb3.gz) 335 Kb LPC: Ligand-Protein Contacts for 5HVL CSU: Contacts of Structural Units for 5HVL Structure Factors (915 Kb) Retrieve 5HVL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HVL from S2C, [Save to disk] Re-refined 5hvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HVL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HVL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hvl] [5hvl_B] [5hvl_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5HVL at PDBWiki (http://pdbwiki.org)

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