5I9E Hydrolase date Feb 20, 2016
title Crystal Structure Of A Nuclear Actin Ternary Complex
authors Z.Chen, T.Cao
compound source
Molecule: Actin-Related Protein 4
Chain: A, C
Synonym: Actin-Like Protein Arp4,Actin-Like Protein 4
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Arp4, Act3, Yjl081c, J1012
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Actin
Chain: B, D
Engineered: Yes
Organism_scientific: Saccharomyces Bayanus
Organism_common: Yeast
Organism_taxid: 4931
Gene: Act1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Helicase Swr1
Chain: H, E
Fragment: Unp Residues 340-410
Synonym: Swi2snf2-Related 1
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Swr1, Ydr334w, D9651.6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.232 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.260 202.220 87.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ATP, MG enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • 3'-5' DNA helicase activity


    • D, B


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (554 Kb) [Save to disk]
  • Biological Unit Coordinates (5i9e.pdb1.gz) 276 Kb
  • Biological Unit Coordinates (5i9e.pdb2.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 5I9E
  • CSU: Contacts of Structural Units for 5I9E
  • Structure Factors (787 Kb)
  • Retrieve 5I9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I9E from S2C, [Save to disk]
  • Re-refined 5i9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I9E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i9e_B] [5i9e_E] [5i9e_C] [5i9e_D] [5i9e_H] [5i9e_A] [5i9e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5I9E: [ACTIN] [HSA ] by SMART
    • Other resources with information on 5I9E
  • Community annotation for 5I9E at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science