5IJD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, D


Primary referenceTLR4/MD-2 activation by a synthetic agonist with no similarity to LPS., Wang Y, Su L, Morin MD, Jones BT, Whitby LR, Surakattula MM, Huang H, Shi H, Choi JH, Wang KW, Moresco EM, Berger M, Zhan X, Zhang H, Boger DL, Beutler B, Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):E884-93. doi:, 10.1073/pnas.1525639113. Epub 2016 Feb 1. PMID:26831104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5ijd.pdb1.gz) 245 Kb
  • Biological Unit Coordinates (5ijd.pdb2.gz) 125 Kb
  • Biological Unit Coordinates (5ijd.pdb3.gz) 125 Kb
  • CSU: Contacts of Structural Units for 5IJD
  • Structure Factors (1348 Kb)
  • Retrieve 5IJD in mmCIF format [Save to disk]
  • Re-refined 5ijd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ijd_D] [5ijd] [5ijd_A] [5ijd_B] [5ijd_C]
  • SWISS-PROT database:
  • Domains found in 5IJD: [LRR] [LRRCT] [LRR_TYP] [ML ] by SMART

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