5J3P	Hydrolase	date	Mar 31, 2016
title	Crystal Structure Of The Catalytic Domain Of Human Tyrosyl D Phosphodiesterase 2
authors	P.Hornyak, L.H.Pearl, K.W.Caldecott, A.W.Oliver
compound		source
Molecule: Tyrosyl-Dna Phosphodiesterase 2 Chain: A, B Synonym: Htdp2,5'-Tyrosyl-Dna Phosphodiesterase,5'-Tyr-Dna Phosphodiesterase,Ets1-Associated Protein 2,Ets1-Associated II,Eapii,Traf And Tnf Receptor-Associated Protein,Tyrosyl-R Phosphodiesterase,Vpg Unlinkase; Ec: 3.1.4.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tdp2, Eap2, Ttrap, Ad-022 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B832(De3)
symmetry	Space Group: P 31 2 1	R_factor 0.256 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.545 92.545 119.075 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	GOL, MG	enzyme	Hydrolase E.C.3.1.4 BRENDA
Primary reference	Mode of action of DNA-competitive small molecule inhibitors of tyrosyl DNA phosphodiesterase 2., Hornyak P, Askwith T, Walker S, Komulainen E, Paradowski M, Pennicott LE, Bartlett EJ, Brissett NC, Raoof A, Watson M, Jordan AM, Ogilvie DJ, Ward SE, Atack JR, Pearl LH, Caldecott KW, Oliver AW, Biochem J. 2016 Apr 20. pii: BCJ20160180. PMID:27099339

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (5j3p.pdb1.gz) 78 Kb Biological Unit Coordinates (5j3p.pdb2.gz) 73 Kb LPC: Ligand-Protein Contacts for 5J3P CSU: Contacts of Structural Units for 5J3P Structure Factors (696 Kb) Retrieve 5J3P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5J3P from S2C, [Save to disk] Re-refined 5j3p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5J3P

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j3p_A] [5j3p_B] [5j3p] SWISS-PROT database: Domain organization of by SWISSPFAM

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