5J63 Transferase date Apr 04, 2016
title Crystal Structure Of The N-Terminal N-Formyltransferase Doma (Residues 1-306) Of Escherichia Coli Arna In Complex With U And Folinic Acid
authors J.B.Thoden, N.A.Genthe, H.M.Holden
compound source
Molecule: Bifunctional Polymyxin Resistance Protein Arna
Chain: A, B, C, D
Engineered: Yes
Other_details: N-Terminal Fragment Of Complete Protein
Organism_scientific: Escherichia Coli H736
Organism_taxid: 656414
Atcc: 39939
Gene: Arna, Echg_02161
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 1
R_factor 0.212 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.994 76.206 84.852 89.94 63.78 61.54
method X-Ray Diffractionresolution 2.50 Å
ligand FNX, G3N enzyme
Gene ECHG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the Escherichia coli ArnA N-Formyltransferase Domain in Complex with N -formyltetrahydrofolate and UDP-Ara4N., Genthe NA, Thoden JB, Holden HM, Protein Sci. 2016 May 12. doi: 10.1002/pro.2938. PMID:27171345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (5j63.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (5j63.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (5j63.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (5j63.pdb4.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5J63
  • CSU: Contacts of Structural Units for 5J63
  • Structure Factors (1021 Kb)
  • Retrieve 5J63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J63 from S2C, [Save to disk]
  • Re-refined 5j63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J63
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j63] [5j63_C] [5j63_D] [5j63_B] [5j63_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J63
  • Community annotation for 5J63 at PDBWiki (http://pdbwiki.org)

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