5K98	Transcription Dna	date	May 31, 2016
title	Structure Of Hipa-Hipb-O2-O3 Complex
authors	M.Schumacher
compound		source
Molecule: Serinethreonine-Protein Kinase Hipa Chain: A, D Synonym: Serthr-Protein Kinase Hipa,Toxin Hipa Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Hipa, B1507, Jw1500 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Antitoxin Hipb Chain: B, P Engineered: Yes		Organism_scientific: Escherichia Coli Mp020980.2 Organism_taxid: 1116139 Gene: Hipb, Ecmp0209802_2194 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Tpcpcpcptpaptpcpcpcpcptptpapapgpgpgpgp G)-3'); Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Cptpaptpcpcpcpcptptpapapgpgpgpgpaptpap A)-3'); Chain: E Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 2	R_factor 0.350 R_Free 0.375
crystal cell	length a length b length c angle alpha angle beta angle gamma 214.036 146.830 53.751 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.99 Å
ligand		enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene	ECMP0209802
Gene Ontology	Chain Function Process Component A, D bacterial-type RNA polymeras... P, B
Primary reference	HipBA-promoter structures reveal the basis of heritable multidrug tolerance., Schumacher MA, Balani P, Min J, Chinnam NB, Hansen S, Vulic M, Lewis K, Brennan RG, Nature. 2015 Aug 6;524(7563):59-64. doi: 10.1038/nature14662. Epub 2015 Jul 29. PMID:26222023

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (5k98.pdb1.gz) 171 Kb CSU: Contacts of Structural Units for 5K98 Structure Factors (169 Kb) Retrieve 5K98 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5K98 from S2C, [Save to disk] Re-refined 5k98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5K98 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5K98

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k98_P] [5k98_D] [5k98_T] [5k98_A] [5k98_E] [5k98] [5k98_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5K98: [HTH_XRE ] by SMART

Other resources with information on 5K98

Community annotation for 5K98 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---