5KBC Oxidoreductase date Jun 02, 2016
title Crystal Structure Of Chlamydia Trachomatis Dsba
authors R.M.Mcmahon, M.K.Groftehauge, J.L.Martin
compound source
Molecule: Dsba
Chain: A, B
Fragment: Unp Residues 78-277
Engineered: Yes
Organism_scientific: Chlamydia Trachomatis Serovar A
Organism_taxid: 580047
Strain: A2497
Gene: Cto_0193
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 21 21 2
R_factor 0.248 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.251 98.131 44.789 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.71 Å
Gene CTO
Primary referenceStructural and Biochemical Characterization of Chlamydia trachomatis DsbA Reveals a Cysteine-Rich and Weakly Oxidising Oxidoreductase., Christensen S, Groftehauge MK, Byriel K, Huston WM, Furlong E, Heras B, Martin JL, McMahon RM, PLoS One. 2016 Dec 28;11(12):e0168485. doi: 10.1371/journal.pone.0168485., eCollection 2016. PMID:28030602
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (5kbc.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (5kbc.pdb2.gz) 59 Kb
  • CSU: Contacts of Structural Units for 5KBC
  • Structure Factors (735 Kb)
  • Retrieve 5KBC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KBC from S2C, [Save to disk]
  • Re-refined 5kbc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KBC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KBC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kbc] [5kbc_A] [5kbc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KBC
  • Community annotation for 5KBC at PDBWiki (http://pdbwiki.org)

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