5KH0 Oxidoreductase date Jun 14, 2016
title Crystal Structure Of Hydf From Thermosipho Melanesiensis In With A [4fe-4s] Cluster
authors G.Caserta, L.Pecqueur, M.Fontecave
compound source
Molecule: Small Gtp-Binding Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Thermosipho Melanesiensis (Strain Dsm Cip 104789 Bi429);
Organism_taxid: 391009
Gene: Tmel_1361
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 1 21 1
R_factor 0.233 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.010 173.480 89.320 90.00 110.01 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand SF4 enzyme
Gene TMEL
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (5kh0.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (5kh0.pdb2.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 5KH0
  • CSU: Contacts of Structural Units for 5KH0
  • Structure Factors (3209 Kb)
  • Retrieve 5KH0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KH0 from S2C, [Save to disk]
  • Re-refined 5kh0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KH0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KH0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kh0_B] [5kh0_D] [5kh0_A] [5kh0] [5kh0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KH0
  • Community annotation for 5KH0 at PDBWiki (http://pdbwiki.org)

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